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BMCBI
2008
77views more  BMCBI 2008»
13 years 5 months ago
SeqAn An efficient, generic C++ library for sequence analysis
Background: The use of novel algorithmic techniques is pivotal to many important problems in life science. For example the sequencing of the human genome [1] would not have been p...
Andreas Döring, David Weese, Tobias Rausch, K...
CORR
2008
Springer
128views Education» more  CORR 2008»
13 years 5 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov

Source Code
579views
14 years 1 months ago
The CImg Library
The CImg Library is an open source, C++ toolkit for image processing, designed with these properties in mind : Usefulness CImg defines classes and methods to manage images in y...
David Tschumperlé
BMCBI
2005
143views more  BMCBI 2005»
13 years 5 months ago
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
Background: In expressed sequence tag (EST) sequencing, we are often interested in how many genes we can capture in an EST sample of a targeted size. This information provides ins...
Ji-Ping Z. Wang, Bruce G. Lindsay 0002, Liying Cui...
BMCBI
2007
128views more  BMCBI 2007»
13 years 5 months ago
A Bayesian nonparametric method for prediction in EST analysis
Background: Expressed sequence tags (ESTs) analyses are a fundamental tool for gene identification in organisms. Given a preliminary EST sample from a certain library, several sta...
Antonio Lijoi, Ramsés H. Mena, Igor Prü...