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» Sequence Prediction Based on Monotone Complexity
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BIOSYSTEMS
2008
129views more  BIOSYSTEMS 2008»
13 years 5 months ago
Reconstruction of DNA sequences using genetic algorithms and cellular automata: Towards mutation prediction?
Change of DNA sequence that fuels evolution is, to a certain extent, a deterministic process because mutagenesis does not occur in an absolutely random manner. So far, it has not ...
Ch. Mizas, Georgios Ch. Sirakoulis, Vasilios A. Ma...
BMCBI
2007
153views more  BMCBI 2007»
13 years 5 months ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte
CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
13 years 11 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson
BMCBI
2008
93views more  BMCBI 2008»
13 years 5 months ago
VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens
Background: Prediction of bacterial virulent protein sequences has implications for identification and characterization of novel virulence-associated factors, finding novel drug/v...
Aarti Garg, Dinesh Gupta
ICMCS
2006
IEEE
146views Multimedia» more  ICMCS 2006»
13 years 11 months ago
Permutation-Based Low-Complexity Alternate Coding in Multi-View H.264/AVC
1 Low bitrates enabled by the H.264/AVC standard come at the cost of significant decoding complexity. The problem is exacerbated when multi-view video coding (MVC), presently being...
Daniel Socek, Dubravko Culibrk, Hari Kalva, Oge Ma...