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» Short inversions and conserved gene clusters
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SAC
2002
ACM
13 years 4 months ago
Short inversions and conserved gene clusters
Two independent sets of recent observations on newly sequenced microbial genomes pertain to the prevalence of short inversion as a gene order rearrangement process and to the lack...
David Sankoff
CSB
2003
IEEE
106views Bioinformatics» more  CSB 2003»
13 years 9 months ago
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss
As gene order evolves through a variety of chromosomal rearrangements, conserved segments provide important insight into evolutionary relationships and functional roles of genes. ...
Jun Huan, Jan Prins, Wei Wang 0010, Todd J. Vision
EDBT
2008
ACM
166views Database» more  EDBT 2008»
14 years 4 months ago
OrthoCluster: a new tool for mining synteny blocks and applications in comparative genomics
By comparing genomes among both closely and distally related species, comparative genomics analysis characterizes structures and functions of different genomes in both conserved a...
Xinghuo Zeng, Matthew J. Nesbitt, Jian Pei, Ke Wan...
BMCBI
2007
164views more  BMCBI 2007»
13 years 4 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
BMCBI
2005
147views more  BMCBI 2005»
13 years 4 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen