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BMCBI
2010
137views more  BMCBI 2010»
13 years 5 months ago
BS Seeker: precise mapping for bisulfite sequencing
Background: Bisulfite sequencing using next generation sequencers yields genome-wide measurements of DNA methylation at single nucleotide resolution. Traditional aligners are not ...
Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini
BMCBI
2010
146views more  BMCBI 2010»
13 years 5 months ago
On the Choice and Number of Microarrays for Transcriptional Regulatory Network Inference
Background: Transcriptional regulatory network inference (TRNI) from large compendia of DNA microarrays has become a fundamental approach for discovering transcription factor (TF)...
Elissa J. Cosgrove, Timothy S. Gardner, Eric D. Ko...
JILP
2000
165views more  JILP 2000»
13 years 4 months ago
BMAT - A Binary Matching Tool for Stale Profile Propagation
A major challenge of applying profile-based optimization on large real-world applications is how to capture adequate profile information. A large program, especially a GUI-based a...
Zheng Wang, Ken Pierce, Scott McFarling