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BIOINFORMATICS
2005
65views more  BIOINFORMATICS 2005»
13 years 4 months ago
Similarity of position frequency matrices for transcription factor binding sites
Dustin E. Schones, Pavel Sumazin, Michael Q. Zhang
BMCBI
2005
94views more  BMCBI 2005»
13 years 4 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
BMCBI
2008
133views more  BMCBI 2008»
13 years 5 months ago
CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated
Background: The identification of transcription factor binding sites is difficult since they are only a small number of nucleotides in size, resulting in large numbers of false po...
Matthew S. Hestand, Michiel van Galen, Michel P. V...
BMCBI
2010
108views more  BMCBI 2010»
13 years 5 months ago
An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs
Background: Transcription factors (TFs) control transcription by binding to specific regions of DNA called transcription factor binding sites (TFBSs). The identification of TFBSs ...
Fernando Garcia-Alcalde, Armando Blanco, Adrian J....
GCB
2004
Springer
113views Biometrics» more  GCB 2004»
13 years 10 months ago
Feature Based Representation and Detection of Transcription Factor Binding Sites
: The prediction of transcription factor binding sites is an important problem, since it reveals information about the transcriptional regulation of genes. A commonly used represen...
Rainer Pudimat, Ernst Günter Schukat-Talamazz...