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» Simultaneous Alignment and Structure Prediction of RNAs
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ICCS
2005
Springer
13 years 10 months ago
Simultaneous Alignment and Structure Prediction of RNAs
Beeta Masoumi, Marcel Turcotte
BIOINFORMATICS
2007
66views more  BIOINFORMATICS 2007»
13 years 5 months ago
MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing
Stinus Lindgreen, Paul P. Gardner, Anders Krogh
BMCBI
2008
244views more  BMCBI 2008»
13 years 5 months ago
RNAalifold: improved consensus structure prediction for RNA alignments
Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...
Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian...
BMCBI
2006
158views more  BMCBI 2006»
13 years 5 months ago
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
Background: Non-coding RNAs (ncRNAs) have a multitude of roles in the cell, many of which remain to be discovered. However, it is difficult to detect novel ncRNAs in biochemical s...
Andrew V. Uzilov, Joshua M. Keegan, David H. Mathe...
BMCBI
2007
87views more  BMCBI 2007»
13 years 5 months ago
A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures
Background: Mitochondrial tRNAs have been the subject of study for structural biologists interested in their secondary structure characteristics, evolutionary biologists have rese...
Konstantin Yu Popadin, Leila A. Mamirova, Fyodor A...