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» Single Pass, BLAST-Like, Approximate String Matching on FPGA...
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FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
13 years 10 months ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...
ICDE
2012
IEEE
252views Database» more  ICDE 2012»
11 years 7 months ago
Approximate String Membership Checking: A Multiple Filter, Optimization-Based Approach
— We consider the approximate string membership checking (ASMC) problem of extracting all the strings or substrings in a document that approximately match some string in a given ...
Chong Sun, Jeffrey F. Naughton, Siddharth Barman