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» SmashCommunity: a metagenomic annotation and analysis tool
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BIOINFORMATICS
2010
96views more  BIOINFORMATICS 2010»
12 years 11 months ago
SmashCommunity: a metagenomic annotation and analysis tool
Manimozhiyan Arumugam, Eoghan D. Harrington, Konra...
BMCBI
2008
152views more  BMCBI 2008»
13 years 4 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
NAR
2011
331views Computer Vision» more  NAR 2011»
12 years 11 months ago
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
The Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis (CAMERA, http://camera.calit2.net/) is a database and associated computational infrastructur...
Shulei Sun, Jing Chen, Weizhong Li, Ilkay Altintas...
BMCBI
2008
125views more  BMCBI 2008»
13 years 4 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
NAR
2010
148views more  NAR 2010»
12 years 11 months ago
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
The prediction of protein function as well as the reconstruction of evolutionary genesis employing sequence comparison at large is still the most powerful tool in sequence analysi...
Thomas Rattei, Patrick Tischler, Stefan Götz,...