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» Solving the Protein Threading Problem in Parallel
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PPOPP
2009
ACM
14 years 5 months ago
Efficient and scalable multiprocessor fair scheduling using distributed weighted round-robin
Fairness is an essential requirement of any operating system scheduler. Unfortunately, existing fair scheduling algorithms are either inaccurate or inefficient and non-scalable fo...
Tong Li, Dan P. Baumberger, Scott Hahn
BMCBI
2010
198views more  BMCBI 2010»
13 years 5 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
ECAL
2005
Springer
13 years 11 months ago
Biological Development of Cell Patterns: Characterizing the Space of Cell Chemistry Genetic Regulatory Networks
Abstract. Genetic regulatory networks (GRNs) control gene expression and are responsible for establishing the regular cellular patterns that constitute an organism. This paper intr...
Nicholas S. Flann, Jing Hu, Mayank Bansal, Vinay P...
CCECE
2006
IEEE
13 years 11 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...
OOPSLA
2009
Springer
13 years 12 months ago
A concurrent dynamic analysis framework for multicore hardware
Software has spent the bounty of Moore’s law by solving harder problems and exploiting abstractions, such as highlevel languages, virtual machine technology, binary rewritdynami...
Jungwoo Ha, Matthew Arnold, Stephen M. Blackburn, ...