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» Sorting Signed Permutations by Inversions in O(nlogn) Time
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RECOMB
2009
Springer
14 years 4 months ago
Sorting Signed Permutations by Inversions in O(nlogn) Time
Krister M. Swenson, Vaibhav Rajan, Yu Lin, Bernard...
STOC
1995
ACM
194views Algorithms» more  STOC 1995»
13 years 7 months ago
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals
Genomes frequently evolve by reversals ␳(i, j) that transform a gene order ␲1 . . . ␲i␲iϩ1 . . . ␲jϪ1␲j . . . ␲n into ␲1 . . . ␲i␲jϪ1 . . . ␲iϩ1␲j . . ....
Sridhar Hannenhalli, Pavel A. Pevzner
WABI
2005
Springer
132views Bioinformatics» more  WABI 2005»
13 years 9 months ago
Perfect Sorting by Reversals Is Not Always Difficult
—We propose new algorithms for computing pairwise rearrangement scenarios that conserve the combinatorial structure of genomes. More precisely, we investigate the problem of sort...
Sèverine Bérard, Anne Bergeron, Cedr...
CPM
2009
Springer
189views Combinatorics» more  CPM 2009»
13 years 11 months ago
Average-Case Analysis of Perfect Sorting by Reversals
A sequence of reversals that takes a signed permutation to the identity is perfect if it preserves all common intervals between the permutation and the identity. The problem of com...
Mathilde Bouvel, Cedric Chauve, Marni Mishna, Domi...
RECOMB
2006
Springer
14 years 4 months ago
Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions
Abstract. During evolution, genomes are subject to genome rearrangements that alter the ordering and orientation of genes on the chromosomes. If a genome consists of a single chrom...
Martin Bader, Enno Ohlebusch