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ATMOS
2007
13 years 6 months ago
Maintenance of Multi-level Overlay Graphs for Timetable Queries
In railways systems the timetable is typically represented as a weighted digraph on which itinerary queries are answered by shortest path algorithms, usually running Dijkstra’s a...
Francesco Bruera, Serafino Cicerone, Gianlorenzo D...
ENTCS
2006
115views more  ENTCS 2006»
13 years 4 months ago
Analyzing the Uses of a Software Modeling Tool
While a lot of progress has been made in improving analyses and tools that aid software development, less effort has been spent on studying how such tools are commonly used in pra...
Xiaoming Li, Daryl Shannon, Jabari Walker, Sarfraz...
BMCBI
2004
154views more  BMCBI 2004»
13 years 4 months ago
Computation of elementary modes: a unifying framework and the new binary approach
Background: Metabolic pathway analysis has been recognized as a central approach to the structural analysis of metabolic networks. The concept of elementary (flux) modes provides ...
Julien Gagneur, Steffen Klamt
SCFBM
2008
92views more  SCFBM 2008»
13 years 4 months ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild