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» Stochastic Model of Protease-Ligand Reactions
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BIBE
2005
IEEE
116views Bioinformatics» more  BIBE 2005»
13 years 10 months ago
Stochastic Model of Protease-Ligand Reactions
Prediction of protein tertiary structure based on amino acid sequence is one of the most challenging open questions in computational molecular biology. The two most common experim...
Paul E. Anderson, Douglas W. Raiford, Deacon J. Sw...
CANDC
2004
ACM
13 years 4 months ago
Stochastic approaches for modelling in vivo reactions
In recent years, stochastic modelling has emerged as a physically more realistic alternative for modelling in vivo reactions. There are numerous stochastic approaches available in...
Thomas E. Turner, Santiago Schnell, Kevin Burrage
CDC
2010
IEEE
141views Control Systems» more  CDC 2010»
12 years 11 months ago
Hybrid moment computation algorithm for biochemical reaction networks
Moment computation is essential to the analysis of stochastic kinetic models of biochemical reaction networks. It is often the case that the moment evolution, usually the first and...
Yun-Bo Zhao, Jongrae Kim, João Pedro Hespan...
CMSB
2010
Springer
12 years 11 months ago
Stochasticity in reactions: a probabilistic Boolean modeling approach
Boolean modeling frameworks have long since proved their worth for capturing and analyzing essential characteristics of complex systems. Hybrid approaches aim at exploiting the ad...
Sven Twardziok, Heike Siebert, Alexander Heyl
BIOCOMP
2007
13 years 6 months ago
Interaction Models for Biochemical Reactions
Abstract—This paper presents a stochastic modelling framework for complex biochemical reaction networks from a component-based perspective. Our approach takes into account the di...
Mila E. Majster-Cederbaum, Nils Semmelrock, Verena...