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» Stochastic Model of Protease-Ligand Reactions
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EUROGP
2008
Springer
13 years 7 months ago
PlasmidPL: A Plasmid-Inspired Language for Genetic Programming
We present PlasmidPL, a plasmid-inspired programming language designed for Genetic Programming (GP), and based on a chemical metaphor. The basic data structures in PlasmidPL are ci...
Lidia Yamamoto
ATAL
2003
Springer
13 years 10 months ago
A multi-agent system for the quantitative simulation of biological networks
We apply the multi-agent system (MAS) platform to the task of biological network simulation. In this paper, we describe the simulation of signal transduction (ST) networks using t...
Salim Khan, Ravi Makkena, Foster McGeary, Keith S....
WWW
2010
ACM
13 years 5 months ago
Using a model of social dynamics to predict popularity of news
Popularity of content in social media is unequally distributed, with some items receiving a disproportionate share of attention from users. Predicting which newly-submitted items ...
Kristina Lerman, Tad Hogg
HYBRID
2001
Springer
13 years 9 months ago
Hybrid Modeling and Simulation of Biomolecular Networks
Abstract. In a biological cell, cellular functions and the genetic regulatory apparatus are implemented and controlled by a network of chemical reactions in which regulatory protei...
Rajeev Alur, Calin Belta, Franjo Ivancic
APVIS
2009
13 years 6 months ago
Visualization of signal transduction processes in the crowded environment of the cell
In this paper, we propose a stochastic simulation to model and analyze cellular signal transduction. The high number of objects in a simulation requires advanced visualization tec...
Martin Falk, Michael Klann, Matthias Reuss, Thomas...