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» String Matching in Hardware Using the FM-Index
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FCCM
2011
IEEE
311views VLSI» more  FCCM 2011»
10 years 5 months ago
String Matching in Hardware Using the FM-Index
—String matching is a ubiquitous problem that arises in a wide range of applications in computing, e.g., packet routing, intrusion detection, web querying, and genome analysis. D...
Edward Fernandez, Walid Najjar, Stefano Lonardi
BMCBI
2008
214views more  BMCBI 2008»
11 years 1 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
DSD
2005
IEEE
123views Hardware» more  DSD 2005»
11 years 7 months ago
Hardware-Based Implementation of the Common Approximate Substring Algorithm
An implementation of an algorithm for string matching, commonly used in DNA string analysis, using configurable technology is proposed. The design of the circuit allows for pipeli...
Kenneth B. Kent, Sharon Van Schaick, Jacqueline E....
MAM
2008
150views more  MAM 2008»
11 years 1 months ago
FPGA based string matching for network processing applications
String matching is a key problem in many network processing applications. Current implementations of this process using software are time consuming and cannot meet gigabit bandwid...
Janardhan Singaraju, John A. Chandy
HPCA
2004
IEEE
12 years 1 months ago
Creating Converged Trace Schedules Using String Matching
This paper focuses on generating efficient software pipelined schedules for in-order machines, which we call Converged Trace Schedules. For a candidate loop, we form a string of t...
Satish Narayanasamy, Yuanfang Hu, Suleyman Sair, B...
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