10 search results - page 1 / 2 » Structural Analysis of Gapped Motifs of a String |
MFCS
2007
Springer
13 years 11 months ago
2007
Springer
Abstract. We investigate the structure of the set of gapped motifs (repeated patterns with don’t cares) of a given string of symbols. A natural equivalence classification is int...
BMCBI
2004
13 years 5 months ago
2004
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
STRINGOLOGY
2004
13 years 6 months ago
2004
Recently, there has been a surge of interest in gapped q-gram filters for approximate string matching. Important design parameters for filters are for example the value of q, the f...
ALMOB
2006
13 years 5 months ago
2006
Background: Motif patterns of maximal saturation emerged originally in contexts of pattern discovery in biomolecular sequences and have recently proven a valuable notion also in t...
BMCBI
2010
13 years 5 months ago
2010
Background: Protein loops encompass 50% of protein residues in available three-dimensional structures. These regions are often involved in protein functions, e.g. binding site, ca...