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BIOINFORMATICS
2011
12 years 8 months ago
ProDy: Protein Dynamics Inferred from Theory and Experiments
Summary: We developed a Python package, ProDy, for structurebased analysis of protein dynamics. ProDy allows for quantitative characterization of structural variations in heteroge...
Ahmet Bakan, Lidio M. Meireles, Ivet Bahar
BMCBI
2008
174views more  BMCBI 2008»
13 years 4 months ago
Evolutionary approaches for the reverse-engineering of gene regulatory networks: A study on a biologically realistic dataset
Background: Inferring gene regulatory networks from data requires the development of algorithms devoted to structure extraction. When only static data are available, gene interact...
Cédric Auliac, Vincent Frouin, Xavier Gidro...
ICCV
1999
IEEE
13 years 9 months ago
Bayesian Structure from Motion
:We formulate structure from motion as a Bayesian inference problem, and use a Markov chain Monte Carlo sampler to sample the posterior on this problem. This results in a method th...
David A. Forsyth, Sergey Ioffe, John A. Haddon
TMA
2010
Springer
199views Management» more  TMA 2010»
13 years 11 months ago
Mixing Biases: Structural Changes in the AS Topology Evolution
In this paper we study the structural evolution of the AS topology as inferred from two different datasets over a period of seven years. We use a variety of topological metrics to...
Hamed Haddadi, Damien Fay, Steve Uhlig, Andrew W. ...
AAAI
2010
13 years 6 months ago
Efficient Belief Propagation for Utility Maximization and Repeated Inference
Many problems require repeated inference on probabilistic graphical models, with different values for evidence variables or other changes. Examples of such problems include utilit...
Aniruddh Nath, Pedro Domingos