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BMCBI
2010
189views more  BMCBI 2010»
13 years 5 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
CSE
2009
IEEE
13 years 11 months ago
Inferring Unobservable Inter-community Links in Large Social Networks
Abstract—Social networks can be used to model social interactions between individuals. In many circumstances, not all interactions between individuals are observed. In such cases...
Heath Hohwald, Manuel Cebrián, Arturo Canal...
BMCBI
2006
129views more  BMCBI 2006»
13 years 4 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
TMI
2008
162views more  TMI 2008»
13 years 4 months ago
Generalized Tensor-Based Morphometry of HIV/AIDS Using Multivariate Statistics on Deformation Tensors
Abstract--This paper investigates the performance of a new multivariate method for tensor-based morphometry (TBM). Statistics on Riemannian manifolds are developed that exploit the...
Natasha Lepore, Caroline A. Brun, Yi-Yu Chou, Ming...