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» Survey of Biological High Performance Computing: Algorithms,...
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DCC
2008
IEEE
13 years 6 months ago
Design and Implementation of a High-Performance Microprocessor Cache Compression Algorithm
Researchers have proposed using hardware data compression units within the memory hierarchies of microprocessors in order to improve performance, energy efficiency, and functional...
Xi Chen, Lei Yang, Haris Lekatsas, Robert P. Dick,...
ICCS
2001
Springer
13 years 9 months ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow
BMCBI
2008
115views more  BMCBI 2008»
13 years 4 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
BMCBI
2010
198views more  BMCBI 2010»
13 years 4 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
PDP
2008
IEEE
13 years 11 months ago
System-Level Virtualization for High Performance Computing
System-level virtualization has been a research topic since the 70’s but regained popularity during the past few years because of the availability of efficient solution such as...
Geoffroy Vallée, Thomas Naughton, Christian...