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» SynBlast: Assisting the analysis of conserved synteny inform...
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BMCBI
2008
113views more  BMCBI 2008»
13 years 4 months ago
SynBlast: Assisting the analysis of conserved synteny information
Motivation: In the last years more than 20 vertebrate genomes have been sequenced, and the rate at which genomic DNA information becomes available is rapidly accelerating. Gene du...
Jörg Lehmann, Peter F. Stadler, Sonja J. Proh...
BMCBI
2007
121views more  BMCBI 2007»
13 years 4 months ago
Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines
Background: In an epitope-based vaccine setting, the use of conserved epitopes would be expected to provide broader protection across multiple strains, or even species, than epito...
Huynh-Hoa Bui, John Sidney, Wei Li, Nicholas Fusse...
IPPS
2006
IEEE
13 years 10 months ago
Compiler assisted dynamic management of registers for network processors
Modern network processors support high levels of parallelism in packet processing by supporting multiple threads that execute on a micro-engine. Threads switch context upon encoun...
R. Collins, Fernando Alegre, Xiaotong Zhuang, Sant...
BMCBI
2005
190views more  BMCBI 2005»
13 years 4 months ago
Species-specific analysis of protein sequence motifs using mutual information
Background: Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles de...
Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joac...
BMCBI
2008
187views more  BMCBI 2008»
13 years 4 months ago
PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
Background: The conservation of gene order among prokaryotic genomes can provide valuable insight into gene function, protein interactions, or events by which genomes have evolved...
Christine Fong, Laurence Rohmer, Matthew Radey, Mi...