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» TRELLIS : An Effective Approach for Indexing Genome-Scale Se...
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SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
14 years 5 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 5 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
JACM
2006
112views more  JACM 2006»
13 years 5 months ago
Linear work suffix array construction
Suffix trees and suffix arrays are widely used and largely interchangeable index structures on strings and sequences. Practitioners prefer suffix arrays due to their simplicity an...
Juha Kärkkäinen, Peter Sanders, Stefan B...
VLDB
1998
ACM
173views Database» more  VLDB 1998»
13 years 5 months ago
Fast Image Retrieval Using Color-Spatial Information
Abstract. In this paper, we present an image retrieval system that employs both the color and spatial information of images to facilitate the retrieval process. The basic unit used...
Beng Chin Ooi, Kian-Lee Tan, Tat-Seng Chua, Wynne ...