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NAR
2006
170views more  NAR 2006»
13 years 4 months ago
The UCSC Genome Browser Database: update 2006
The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major m...
Angela S. Hinrichs, Donna Karolchik, Robert Baerts...
IVS
2007
100views more  IVS 2007»
13 years 4 months ago
NetLens: iterative exploration of content-actor network data
Networks have remained a challenge for information retrieval and visualization because of the rich set of tasks that users want to accomplish. This paper n abstract Content-Actor ...
Hyunmo Kang, Catherine Plaisant, Bongshin Lee, Ben...
BMCBI
2004
173views more  BMCBI 2004»
13 years 4 months ago
d-matrix - database exploration, visualization and analysis
Background: Motivated by a biomedical database set up by our group, we aimed to develop a generic database front-end with embedded knowledge discovery and analysis features. A maj...
Dominik Seelow, Raffaello Galli, Siegrun Mebus, Ha...
BMCBI
2006
128views more  BMCBI 2006»
13 years 4 months ago
Comparative assessment of performance and genome dependence among phylogenetic profiling methods
Background: The rapidly increasing speed with which genome sequence data can be generated will be accompanied by an exponential increase in the number of sequenced eukaryotes. Wit...
Evan S. Snitkin, Adam M. Gustafson, Joseph C. Mell...
BMCBI
2007
162views more  BMCBI 2007»
13 years 4 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee