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APIN
2002
106views more  APIN 2002»
13 years 5 months ago
Querying Temporal Constraint Networks: A Unifying Approach
We develop the scheme of indefinite constraint databases using first-order logic as our representation language. When this scheme is instantiated with temporal constraints, the res...
Manolis Koubarakis
BMCBI
2006
153views more  BMCBI 2006»
13 years 5 months ago
Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling
Background: It is one of the ultimate goals for modern biological research to fully elucidate the intricate interplays and the regulations of the molecular determinants that prope...
Xia Li, Shaoqi Rao, Wei Jiang, Chuanxing Li, Yun X...
CMSB
2010
Springer
13 years 8 days ago
Action-based analysis of discrete regulatory networks with short-term stimuli
To incorporate instant effects and different timescales within a single biological system, an extension of discrete regulatory networks with short-term stimuli is proposed. By mai...
Christian Krause, Carola Krause, Erik P. de Vink
BMCBI
2006
119views more  BMCBI 2006»
13 years 5 months ago
A methodology for the structural and functional analysis of signaling and regulatory networks
Background: Structural analysis of cellular interaction networks contributes to a deeper understanding of network-wide interdependencies, causal relationships, and basic functiona...
Steffen Klamt, Julio Saez-Rodriguez, Jonathan A. L...
IV
2009
IEEE
155views Visualization» more  IV 2009»
13 years 12 months ago
Visualizing Temporal Dynamics at the Genomic and Metabolic Level
We present an application for integrated visualization of gene expression data from time series experiments in gene regulation networks and metabolic networks. Such integration is...
Romain Bourqui, Michel A. Westenberg