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» Tests for gene clustering
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IMSCCS
2007
IEEE
13 years 10 months ago
Multi-dimensional Cluster Misclassification Test for Pathway Differential Analysis of Diabetes
Gene pathway can be defined as a group of genes that interact with each other to perform some biological processes. Along with the efforts to identify the individual genes that pl...
Lily R. Liang, Vinay Mandal, Yi Lu, Deepak Kumar
WOB
2008
128views Bioinformatics» more  WOB 2008»
13 years 5 months ago
Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion
Abstract. We study a parametrized definition of gene clusters that permits control over the trade-off between increasing gene content versus conserving gene order within a cluster....
Ximing Xu, David Sankoff
BMCBI
2007
173views more  BMCBI 2007»
13 years 4 months ago
Recursive Cluster Elimination (RCE) for classification and feature selection from gene expression data
Background: Classification studies using gene expression datasets are usually based on small numbers of samples and tens of thousands of genes. The selection of those genes that a...
Malik Yousef, Segun Jung, Louise C. Showe, Michael...
CSB
2005
IEEE
118views Bioinformatics» more  CSB 2005»
13 years 10 months ago
Gene Teams with Relaxed Proximity Constraint
Functionally related genes co-evolve, probably due to the strong selection pressure in evolution. Thus we expect that they are present in multiple genomes. Physical proximity amon...
Sun Kim, Jeong-Hyeon Choi, Jiong Yang
BIBE
2010
IEEE
148views Bioinformatics» more  BIBE 2010»
12 years 11 months ago
Prediction of Gene Ontology Annotations Based on Gene Functional Clustering
We propose an algorithm that predicts potentially missing Gene Ontology annotations, in order to speed up the time-consuming annotation curation process. The proposed method extend...
Marco Tagliasacchi, Roberto Sarati, Marco Masserol...