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2010
Tsinghua U.
13 years 7 months ago
InterferenceRemoval: removing interference of disk access for MPI programs through data replication
As the number of I/O-intensive MPI programs becomes increasingly large, many efforts have been made to improve I/O performance, on both software and architecture sides. On the sof...
Xuechen Zhang, Song Jiang
USENIX
2008
13 years 7 months ago
Vx32: Lightweight User-level Sandboxing on the x86
Code sandboxing is useful for many purposes, but most sandboxing techniques require kernel modifications, do not completely isolate guest code, or incur substantial performance co...
Bryan Ford, Russ Cox
BMCBI
2010
103views more  BMCBI 2010»
13 years 5 months ago
MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
Toshihide Hara, Keiko Sato, Masanori Ohya
BMCBI
2008
123views more  BMCBI 2008»
13 years 5 months ago
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
BMCBI
2007
151views more  BMCBI 2007»
13 years 5 months ago
Identification of hot regions in protein-protein interactions by sequential pattern mining
Background: Identification of protein interacting sites is an important task in computational molecular biology. As more and more protein sequences are deposited without available...
Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu, Chih...