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» The Complexity of Rooted Phylogeny problems
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ACL
2010
13 years 3 months ago
Finding Cognate Groups Using Phylogenies
A central problem in historical linguistics is the identification of historically related cognate words. We present a generative phylogenetic model for automatically inducing cogn...
David Hall, Dan Klein
TKDE
2008
153views more  TKDE 2008»
13 years 5 months ago
Discovering Frequent Agreement Subtrees from Phylogenetic Data
We study a new data mining problem concerning the discovery of frequent agreement subtrees (FASTs) from a set of phylogenetic trees. A phylogenetic tree, or phylogeny, is an unorde...
Sen Zhang, Jason Tsong-Li Wang
COCOON
2009
Springer
14 years 10 days ago
On the Generalised Character Compatibility Problem for Non-branching Character Trees
In [3], the authors introduced the Generalised Character Compatibility Problem as a generalisation of the Perfect Phylogeny Problem for a set of species. This generalised problem t...
Ján Manuch, Murray Patterson, Arvind Gupta
BMCBI
2010
185views more  BMCBI 2010»
13 years 24 days ago
MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heu
Background: The development, in the last decade, of stochastic heuristics implemented in robust application softwares has made large phylogeny inference a key step in most compara...
Raphaël Helaers, Michel C. Milinkovitch
NAR
2006
120views more  NAR 2006»
13 years 5 months ago
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
Phylogenetic analysis and examination of protein domains allow accurate genome annotation and are invaluable to study proteins and protein complex evolution. However, two sequence...
Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, J...