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» The Distribution of Genomic Distance between Random Genomes
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JCB
2006
124views more  JCB 2006»
13 years 4 months ago
The Distribution of Genomic Distance between Random Genomes
We study the probability distribution of genomic distance d under the hypothesis of random gene order. We translate the random order assumption into a stochastic method for constr...
David Sankoff, Lani Haque
DAM
2008
116views more  DAM 2008»
13 years 4 months ago
Expected number of breakpoints after t random reversals in genomes with duplicate genes
In comparative genomics, one wishes to deduce the evolutionary distance between dierent species by studying their genomes. Using gene order information, we seek the number of time...
Niklas Eriksen
CSB
2005
IEEE
192views Bioinformatics» more  CSB 2005»
13 years 10 months ago
Operon Prediction in Cyanobacteria using Comparative Genomics
In this work, we performed a comprehensive analysis of the genome organization of eight publicly available cyanobacterial genomes and of the extensively studied Escherichia coli K...
Natalia Khuri, Nikhila S. Rao
BMCBI
2005
127views more  BMCBI 2005»
13 years 4 months ago
Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
Background: The genomes of prokaryotes and lower eukaryotes display a very strong 11 bp periodic bias in the distribution of their nucleotides. This bias is present throughout a g...
Etienne Larsabal, Antoine Danchin