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SIGMOD
2004
ACM
196views Database» more  SIGMOD 2004»
14 years 6 months ago
FARMER: Finding Interesting Rule Groups in Microarray Datasets
Microarray datasets typically contain large number of columns but small number of rows. Association rules have been proved to be useful in analyzing such datasets. However, most e...
Gao Cong, Anthony K. H. Tung, Xin Xu, Feng Pan, Ji...
KDD
2005
ACM
137views Data Mining» more  KDD 2005»
14 years 6 months ago
Pattern-based similarity search for microarray data
One fundamental task in near-neighbor search as well as other similarity matching efforts is to find a distance function that can efficiently quantify the similarity between two o...
Haixun Wang, Jian Pei, Philip S. Yu
JMLR
2010
105views more  JMLR 2010»
13 years 1 months ago
Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data
In this study, we combined the ChIP-seq and the transcriptome data and integrated these data into signaling cascades. Integration was realized through a framework based on data- a...
Zerrin Isik, Volkan Atalay, Rengül Çet...
EJASP
2010
132views more  EJASP 2010»
13 years 1 months ago
Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model
The problem of uncovering transcriptional regulation by transcription factors (TFs) based on microarray data is considered. A novel Bayesian sparse correlated rectified factor mod...
Jia Meng, Jianqiu Zhang, Yuan (Alan) Qi, Yidong Ch...
KDD
2004
ACM
145views Data Mining» more  KDD 2004»
14 years 6 months ago
Mining coherent gene clusters from gene-sample-time microarray data
Extensive studies have shown that mining microarray data sets is important in bioinformatics research and biomedical applications. In this paper, we explore a novel type of genesa...
Daxin Jiang, Jian Pei, Murali Ramanathan, Chun Tan...