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CIBCB
2005
IEEE
13 years 10 months ago
The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space
— Part of the challenge of modeling protein sequences is their discrete nature. Many of the most powerful statistical and learning techniques are applicable to points in a Euclid...
Eleazar Eskin, Sagi Snir
IJDMB
2008
128views more  IJDMB 2008»
13 years 4 months ago
Protein homology detection with biologically inspired features and interpretable statistical models
: Computational classification of proteins using methods such as string kernels and Fisher-SVM has demonstrated great success. However, the resulting models do not offer an immedia...
Pai-Hsi Huang, Vladimir Pavlovic
NIPS
2007
13 years 5 months ago
Kernels on Attributed Pointsets with Applications
This paper introduces kernels on attributed pointsets, which are sets of vectors embedded in an euclidean space. The embedding gives the notion of neighborhood, which is used to d...
Mehul Parsana, Sourangshu Bhattacharya, Chiru Bhat...