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» The Integrated Microbial Genomes (IMG) System: A Case Study ...
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WWW
2006
ACM
14 years 5 months ago
Knowledge modeling and its application in life sciences: a tale of two ontologies
High throughput glycoproteomics, similar to genomics and proteomics, involves extremely large volumes of distributed, heterogeneous data as a basis for identification and quantifi...
Satya Sanket Sahoo, Christopher Thomas, Amit P. Sh...
SAC
2003
ACM
13 years 9 months ago
Similar_Join: Extending DBMS with a Bio-specific Operator
Existing sequence comparison software applications lack automation, abstraction, performance, and flexibility. Users need a new way of studying and applying sequence comparisons i...
Jake Yue Chen, John V. Carlis
CLADE
2008
IEEE
13 years 11 months ago
SWARM: a scientific workflow for supporting bayesian approaches to improve metabolic models
With the exponential growth of complete genome sequences, the analysis of these sequences is becoming a powerful approach to build genome-scale metabolic models. These models can ...
Xinghua Shi, Rick Stevens
BMCBI
2010
164views more  BMCBI 2010»
13 years 4 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
ACSW
2006
13 years 6 months ago
Toward building grid applications in bioinformatics
In silico bioinformatics experiments involve integration of and access to computational tools and biological databases. The emerging grid computing technologies enable bioinformat...
Xiujun Gong, Kensuke Nakamura, Kei Yura, Nobuhiro ...