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» The LabelHash Algorithm for Substructure Matching
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GCB
2008
Springer
174views Biometrics» more  GCB 2008»
13 years 6 months ago
Lightweight Comparison of RNAs based on Exact Sequence-structure Matches
: Specific functions of RNA molecules are often associated with different motifs in the RNA structure. The key feature that forms such an RNA motif is the combination of sequence ...
Steffen Heyne, Sebastian Will, Michael Beckstette,...
ICML
2007
IEEE
14 years 6 months ago
Structural alignment based kernels for protein structure classification
Structural alignments are the most widely used tools for comparing proteins with low sequence similarity. The main contribution of this paper is to derive various kernels on prote...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
CLUSTER
2007
IEEE
13 years 11 months ago
Sequential and parallel implementation of a constraint-based algorithm for searching protein structures
— Data mining in biological structure libraries can be a powerful tool to better understand biochemical processes. This article introduces the LISA algorithm which enables the re...
Sascha Hunold, Thomas Rauber, Georg Wille
IPCO
2007
81views Optimization» more  IPCO 2007»
13 years 6 months ago
Matching Problems in Polymatroids Without Double Circuits
According to the present state of the theory of the matroid matching problem, the existence of a good characterization to the size of a maximum matching depends on the behavior of ...
Márton Makai, Gyula Pap, Jácint Szab...
DSS
2006
116views more  DSS 2006»
13 years 5 months ago
Matching knowledge elements in concept maps using a similarity flooding algorithm
Concept mapping systems used in education and knowledge management emphasize flexibility of representation to enhance learning and facilitate knowledge capture. Collections of con...
Byron Marshall, Hsinchun Chen, Therani Madhusudan