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» The Los Alamos hepatitis C sequence database
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BIOINFORMATICS
2005
62views more  BIOINFORMATICS 2005»
13 years 5 months ago
The Los Alamos hepatitis C sequence database
Carla Kuiken, Karina Yusim, Laura Boykin, Russell ...
BMCBI
2008
103views more  BMCBI 2008»
13 years 5 months ago
The VirusBanker database uses a Java program to allow flexible searching through Bunyaviridae sequences
Background: Viruses of the Bunyaviridae have segmented negative-stranded RNA genomes and several of them cause significant disease. Many partial sequences have been obtained from ...
Mathieu Fourment, Mark J. Gibbs
NGC
2007
Springer
150views Communications» more  NGC 2007»
13 years 5 months ago
Exploiting Temporal Relations in Mining Hepatitis Data
Various data mining methods have been developed last few years for hepatitis study using a large temporal and relational database given to the research community. In this work we i...
Tu Bao Ho, Canh Hao Nguyen, Saori Kawasaki, Si Qua...
BMCBI
2010
135views more  BMCBI 2010»
13 years 5 months ago
A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis
Background: Accurate classification into genotypes is critical in understanding evolution of divergent viruses. Here we report a new approach, MuLDAS, which classifies a query seq...
Ji Woong Kim, Yongju Ahn, Kichan Lee, Sung-Hee Par...
BMCBI
2006
92views more  BMCBI 2006»
13 years 5 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...