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» The Molecular Biology Database Collection: 2002 update
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SIGCSE
2002
ACM
118views Education» more  SIGCSE 2002»
13 years 5 months ago
A proposed undergraduate bioinformatics curriculum for computer scientists
Bioinformatics is a new and rapidly evolving discipline that has emerged from the fields of experimental molecular biology and biochemistry, and from the the artificial intelligen...
Travis E. Doom, Michael L. Raymer, Dan E. Krane, O...
BMCBI
2006
89views more  BMCBI 2006»
13 years 5 months ago
ORENZA: a web resource for studying ORphan ENZyme activities
Background: Despite the current availability of several hundreds of thousands of amino acid sequences, more than 36% of the enzyme activities (EC numbers) defined by the Nomenclat...
Olivier Lespinet, Bernard Labedan
BMCBI
2004
121views more  BMCBI 2004»
13 years 5 months ago
DEDB: a database of Drosophila melanogaster exons in splicing graph form
Background: A wealth of quality genomic and mRNA/EST sequences in recent years has provided the data required for large-scale genome-wide analysis of alternative splicing. We have...
Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan
BMCBI
2008
211views more  BMCBI 2008»
13 years 5 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
KDD
2008
ACM
192views Data Mining» more  KDD 2008»
14 years 6 months ago
Partial least squares regression for graph mining
Attributed graphs are increasingly more common in many application domains such as chemistry, biology and text processing. A central issue in graph mining is how to collect inform...
Hiroto Saigo, Koji Tsuda, Nicole Krämer