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» The Motif Tracking Algorithm

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BMCBI
2007

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Discriminative motif discovery in DNA and protein sequences using the DEME algorithm

13 years 6 months ago

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Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...

Emma Redhead, Timothy L. Bailey

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KES
2005
Springer

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Generalized Composite Motif Discovery

13 years 11 months ago

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This paper discusses a general algorithm for the discovery of motif combinations. From a large number of input motifs, discovered by any single motif discovery tool, our algorithm ...

Geir Kjetil Sandve, Finn Drabløs

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BMCBI
2010

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Metamotifs - a generative model for building families of nucleotide position weight matrices

13 years 6 months ago

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Background: Development of high-throughput methods for measuring DNA interactions of transcription factors together with computational advances in short motif inference algorithms...

Matias Piipari, Thomas A. Down, Tim J. P. Hubbard

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CPM
2007
Springer

222views Combinatorics» more CPM 2007»

Computing Exact p-Value for Structured Motif

14 years 6 days ago

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Extracting motifs from a set of DNA sequences is important in computational biology. Occurrence probability is a common used statistics to evaluate the statistical signiﬁcance of...

Jing Zhang, Xi Chen, Ming Li

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IJCSS
2000

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Genetic algorithms and extraction of rules for detection of short DNA motifs

13 years 5 months ago