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NAR
2010
173views more  NAR 2010»
12 years 11 months ago
The Protein Naming Utility: a rules database for protein nomenclature
Generation of syntactically correct and unambiguous names for proteins is a challenging, yet vital task for functional annotation processes. Proteins are often named based on homo...
Johannes Goll, Robert Montgomery, Lauren M. Brinka...
BMCBI
2006
106views more  BMCBI 2006»
13 years 4 months ago
Gene and protein nomenclature in public databases
Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
Katrin Fundel, Ralf Zimmer
BMCBI
2010
162views more  BMCBI 2010»
13 years 4 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
BMCBI
2005
125views more  BMCBI 2005»
13 years 4 months ago
A simple approach for protein name identification: prospects and limits
Background: Significant parts of biological knowledge are available only as unstructured text in articles of biomedical journals. By automatically identifying gene and gene produc...
Katrin Fundel, Daniel Güttler, Ralf Zimmer, J...
BMCBI
2005
151views more  BMCBI 2005»
13 years 4 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...