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COCOON
2007
Springer
13 years 10 months ago
Seed-Based Exclusion Method for Non-coding RNA Gene Search
Given an RNA family characterized by conserved sequences and folding constraints, the problem is to search for all the instances of the RNA family in a genomic database. As seed-ba...
Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabr...
NAR
2002
84views more  NAR 2002»
13 years 4 months ago
SCOR: a Structural Classification of RNA database
The Structural Classification of RNA (SCOR) database provides a survey of the three-dimensional motifs contained in 259 NMR and X-ray RNA structures. In one classification, the st...
Peter S. Klosterman, Makio Tamura, Stephen R. Holb...
NAR
2000
182views more  NAR 2000»
13 years 4 months ago
tmRDB (tmRNA database)
Maintained at the University of Texas Health Science Center at Tyler, Texas, the tmRNA database (tmRDB) is accessible at the URL http://psyche.uthct.edu/dbs/ tmRDB/tmRDB.html with...
Christian Zwieb, Jacek Wower
SSDBM
2007
IEEE
131views Database» more  SSDBM 2007»
13 years 10 months ago
Mining RNA Tertiary Motifs with Structure Graphs
We present a novel application of graph database mining to identify tertiary motifs in RNA structures. In od, we abstract an RNA molecule as a labeled graph and use a frequent sub...
Xueyi Wang, Jun Huan, Jack Snoeyink, Wei Wang 0010
NAR
2000
65views more  NAR 2000»
13 years 4 months ago
PLMItRNA, a database for tRNAs and tRNA genes in plant mitochondria: enlargement and updating
The current version of PLMItRNA has been realized to constitute a database for tRNA molecules and genes identified in the mitochondria of all green plants (Viridiplantae). It is t...
Vito Volpetti, Raffaele Gallerani, Caterina De Ben...