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» The Small-World Model for Amino Acid Interaction Networks
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AINA
2009
IEEE
13 years 11 months ago
The Small-World Model for Amino Acid Interaction Networks
—In this paper we introduce the notion of protein interaction network. This is a graph whose vertices are the protein’s amino acids and whose edges are the interactions between...
Omar Gaci, Stefan Balev
BMCBI
2010
119views more  BMCBI 2010»
13 years 4 months ago
Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase
Background: The knowledge about proteins with specific interaction capacity to the protein partners is very important for the modeling of cell signaling networks. However, the exp...
Boris Sobolev, Dmitry Filimonov, Alexey Lagunin, A...
BMCBI
2006
130views more  BMCBI 2006»
13 years 4 months ago
An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution ma
Background: Quantitative descriptions of amino acid similarity, expressed as probabilistic models of evolutionary interchangeability, are central to many mainstream bioinformatic ...
Blazej Bulka, Marie desJardins, Stephen J. Freelan...
INFOVIS
2003
IEEE
13 years 10 months ago
Multiscale Visualization of Small World Networks
Many networks under study in Information Visualization are “small world” networks. These networks first appeared in the study social networks and were shown to be relevant mod...
David Auber, Yves Chiricota, Fabien Jourdan, Guy M...
WWW
2004
ACM
14 years 5 months ago
Small world peer networks in distributed web search
In ongoing research, a collaborative peer network application is being proposed to address the scalability limitations of centralized search engines. Here we introduce a local ada...
Ruj Akavipat, Le-Shin Wu, Filippo Menczer