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GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
13 years 10 months ago
The evolutionary computation approach to motif discovery in biological sequences
Finding motifs — patterns of conserved residues — within nucleotide and protein sequences is a key part of understanding function and regulation within biological systems. Thi...
Michael A. Lones, Andrew M. Tyrrell
ISMB
1993
13 years 5 months ago
Representation for Discovery of Protein Motifs
There are several dimensions and levels of complexity in which information on protein motifs may be available. For example, onedimensional sequence motifs may be associated with s...
Darrell Conklin, Suzanne Fortier, Janice I. Glasgo...
BMCBI
2007
179views more  BMCBI 2007»
13 years 4 months ago
rMotifGen: random motif generator for DNA and protein sequences
Background: Detection of short, subtle conserved motif regions within a set of related DNA or amino acid sequences can lead to discoveries about important regulatory domains such ...
Eric C. Rouchka, C. Timothy Hardin
TCS
2008
13 years 4 months ago
Motif patterns in 2D
Motif patterns consisting of sequences of intermixed solid and don't care characters have been introduced and studied in connection with pattern discovery problems of computa...
Alberto Apostolico, Laxmi Parida, Simona E. Rombo
CIBCB
2006
IEEE
13 years 10 months ago
Motif Evaluation by Leave-one-out Scoring
Abstract— We propose a new method for collecting information on regulatory elements found by any motif discovery program. We suggest that combining the results of n leave-oneout ...
Audrey Girouard, Noah W. Smith, Donna K. Slonim