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BMCBI
2007
104views more  BMCBI 2007»
13 years 5 months ago
Joint mapping of genes and conditions via multidimensional unfolding analysis
Background: Microarray compendia profile the expression of genes in a number of experimental conditions. Such data compendia are useful not only to group genes and conditions base...
Katrijn Van Deun, Kathleen Marchal, Willem J. Heis...
ALMOB
2006
155views more  ALMOB 2006»
13 years 5 months ago
Refining motifs by improving information content scores using neighborhood profile search
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
Chandan K. Reddy, Yao-Chung Weng, Hsiao-Dong Chian...
PODS
2008
ACM
211views Database» more  PODS 2008»
14 years 5 months ago
The power of two min-hashes for similarity search among hierarchical data objects
In this study we propose sketching algorithms for computing similarities between hierarchical data. Specifically, we look at data objects that are represented using leaf-labeled t...
Sreenivas Gollapudi, Rina Panigrahy
BMCBI
2008
201views more  BMCBI 2008»
13 years 5 months ago
A copula method for modeling directional dependence of genes
Background: Genes interact with each other as basic building blocks of life, forming a complicated network. The relationship between groups of genes with different functions can b...
Jong-Min Kim, Yoon-Sung Jung, Engin A. Sungur, Kap...
ALMOB
2006
135views more  ALMOB 2006»
13 years 5 months ago
P-value based visualization of codon usage data
Two important and not yet solved problems in bacterial genome research are the identification of horizontally transferred genes and the prediction of gene expression levels. Both ...
Peter Meinicke, Thomas Brodag, Wolfgang Florian Fr...