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ENGL
2008
78views more  ENGL 2008»
9 years 2 months ago
Threshold for Positional Weight Matrix
In biological sequence research, the positional weight matrix (PWM) is often used to search for putative transcription factor binding sites. A set of experimentally verified oligon...
Yunlian Pan, Sieu Phan
COLT
1999
Springer
9 years 6 months ago
Learning Threshold Functions with Small Weights Using Membership Queries
We study the learnability of Threshold functions with bounded weights using membership queries only. We show that the class Ct of Threshold functions with positive integer weights...
Elias Abboud, Nader Agha, Nader H. Bshouty, Nizar ...
BMCBI
2010
153views more  BMCBI 2010»
9 years 2 months ago
Metamotifs - a generative model for building families of nucleotide position weight matrices
Background: Development of high-throughput methods for measuring DNA interactions of transcription factors together with computational advances in short motif inference algorithms...
Matias Piipari, Thomas A. Down, Tim J. P. Hubbard
IPL
2006
86views more  IPL 2006»
9 years 2 months ago
Monotone circuits for monotone weighted threshold functions
Weighted threshold functions with positive weights are a natural generalization of unweighted threshold functions. These functions are clearly monotone. However, the naive way of ...
Amos Beimel, Enav Weinreb
GCB
2004
Springer
223views Biometrics» more  GCB 2004»
9 years 6 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
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