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BMCBI
2011
12 years 12 months ago
Tiling array data analysis: a multiscale approach using wavelets
Background: Tiling array data is hard to interpret due to noise. The wavelet transformation is a widely used technique in signal processing for elucidating the true signal from no...
Alexander Karpikov, Joel S. Rozowsky, Mark Gerstei...

Book
3743views
15 years 2 months ago
Image processing and data analysis: The multiscale approach
"There is a very large literature on the theoretical underpinnings of the wavelet transform. However, theory must be complemented with a significant amount of practical work...
Jean-Luc Starck, Fionn Murtagh, Albert Bijaoui
BMCBI
2006
147views more  BMCBI 2006»
13 years 4 months ago
A hidden Markov model approach for determining expression from genomic tiling micro arrays
Background: Genomic tiling micro arrays have great potential for identifying previously undiscovered coding as well as non-coding transcription. To-date, however, analyses of thes...
Kasper Munch, Paul P. Gardner, Peter Arctander, An...
BMCBI
2008
103views more  BMCBI 2008»
13 years 5 months ago
Parameter estimation for robust HMM analysis of ChIP-chip data
Background: Tiling arrays are an important tool for the study of transcriptional activity, proteinDNA interactions and chromatin structure on a genome-wide scale at high resolutio...
Peter Humburg, David Bulger, Glenn Stone
PCI
2005
Springer
13 years 10 months ago
Tuning Blocked Array Layouts to Exploit Memory Hierarchy in SMT Architectures
Cache misses form a major bottleneck for memory-intensive applications, due to the significant latency of main memory accesses. Loop tiling, in conjunction with other program tran...
Evangelia Athanasaki, Kornilios Kourtis, Nikos Ana...