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» Topology Search over Biological Databases
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ICDE
2007
IEEE
124views Database» more  ICDE 2007»
14 years 6 months ago
Topology Search over Biological Databases
We introduce the notion of a data topology and the problem of topology search over databases. A data topology summarizes the set of all possible relationships that connect a given...
Lin Guo, Jayavel Shanmugasundaram, Golan Yona
BMCBI
2007
177views more  BMCBI 2007»
13 years 4 months ago
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
Background: High-throughput molecular biology provides new data at an incredible rate, so that the increase in the size of biological databanks is enormous and very rapid. This sc...
Claudio Corsi, Paolo Ferragina, Roberto Marangoni
EDBT
2012
ACM
257views Database» more  EDBT 2012»
11 years 7 months ago
Indexing and mining topological patterns for drug discovery
Increased availability of large repositories of chemical compounds has created new challenges and opportunities for the application of data-mining and indexing techniques to probl...
Sayan Ranu, Ambuj K. Singh
NAR
2011
189views Computer Vision» more  NAR 2011»
12 years 7 months ago
EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities
We present the relational database EDULISS (EDinburgh University Ligand Selection System), which stores structural, physicochemical and pharmacophoric properties of small molecule...
Kun-Yi Hsin, Hugh P. Morgan, Steven R. Shave, Andr...
BMCBI
2010
91views more  BMCBI 2010»
13 years 4 months ago
Ranked retrieval of Computational Biology models
Background: The study of biological systems demands computational support. If targeting a biological problem, the reuse of existing computational models can save time and effort. ...
Ron Henkel, Lukas Endler, Andre Peters, Nicolas Le...