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» Topology and prediction of RNA pseudoknots
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WABI
2010
Springer
188views Bioinformatics» more  WABI 2010»
13 years 2 months ago
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs
Abstract. We present three heuristic strategies for folding RNA sequences into secondary structures including kissing hairpin motifs. The new idea is to construct a kissing hairpin...
Corinna Theis, Stefan Janssen, Robert Giegerich
BIOINFORMATICS
2011
12 years 11 months ago
Topology and prediction of RNA pseudoknots
Christian M. Reidys, Fenix W. D. Huang, Jør...
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
BMCBI
2004
190views more  BMCBI 2004»
13 years 4 months ago
RAG: RNA-As-Graphs web resource
Background: The proliferation of structural and functional studies of RNA has revealed an increasing range of RNA's structural repertoire. Toward the objective of systematic ...
Daniela Fera, Namhee Kim, Nahum Shiffeldrim, Julie...
BMCBI
2004
151views more  BMCBI 2004»
13 years 4 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich