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» Toward a Systems Biology Software Toolkit
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BMCBI
2007
147views more  BMCBI 2007»
13 years 4 months ago
Modeling biochemical transformation processes and information processing with Narrator
Background: Software tools that model and simulate the dynamics of biological processes and systems are becoming increasingly important. Some of these tools offer sophisticated gr...
Johannes J. Mandel, Hendrik Fuß, Niall M. Pa...
HPCC
2007
Springer
13 years 11 months ago
Dynamic System-Wide Reconfiguration of Grid Deployments in Response to Intrusion Detections
As Grids become increasingly relied upon as critical infrastructure, it is imperative to ensure the highly-available and secure day-to-day operation of the Grid infrastructure. The...
Jonathan C. Rowanhill, Glenn S. Wasson, Zach Hill,...
HPDC
2010
IEEE
13 years 5 months ago
Biocompute: towards a collaborative workspace for data intensive bio-science
The explosion of data in the biological community demands the development of more scalable and flexible portals for bioinformatic computation. To address this need, we put forth c...
Rory Carmichael, Patrick Braga-Henebry, Douglas Th...
IJON
2007
83views more  IJON 2007»
13 years 4 months ago
Neurospaces: Towards automated model partitioning for parallel computers
Parallel computers have the computing power needed to simulate biologically accurate neuronal network models. Partitioning is the process of cutting a model in pieces and assignin...
Hugo Cornelis, Erik De Schutter
BMCBI
2010
143views more  BMCBI 2010»
13 years 5 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...