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» Towards knowledge-based gene expression data mining
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BMCBI
2010
151views more  BMCBI 2010»
13 years 4 months ago
TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and e
Background: Identification of transcription factors (TFs) involved in a biological process is the first step towards a better understanding of the underlying regulatory mechanisms...
Xiaoqi Cui, Tong Wang, Huann-Sheng Chen, Victor Bu...
JBI
2007
138views Bioinformatics» more  JBI 2007»
13 years 4 months ago
Towards knowledge-based gene expression data mining
ct 10 The field of gene expression data analysis has grown in the past few years from being purely data-centric to integrative, aiming at 11 complementing microarray analysis with...
Riccardo Bellazzi, Blaz Zupan
BMCBI
2005
153views more  BMCBI 2005»
13 years 4 months ago
Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical
Background: Routine application of gene expression microarray technology is rapidly producing large amounts of data that necessitate new approaches of analysis. The analysis of a ...
Giacomo Finocchiaro, Francesco Mancuso, Heiko M&uu...
ISMIS
2005
Springer
13 years 10 months ago
Towards Ad-Hoc Rule Semantics for Gene Expression Data
The notion of rules is very popular and appears in different flavors, for example as association rules in data mining or as functional (or multivalued) dependencies in databases. ...
Marie Agier, Jean-Marc Petit, Einoshin Suzuki
BMCBI
2006
155views more  BMCBI 2006»
13 years 4 months ago
AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data
Background: DNA microarrays are a powerful tool for monitoring the expression of tens of thousands of genes simultaneously. With the advance of microarray technology, the challeng...
Guoqing Lu, The V. Nguyen, Yuannan Xia, Michael Fr...