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BMCBI
2008
138views more  BMCBI 2008»
13 years 5 months ago
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Background: The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that ha...
Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi...
IPPS
2007
IEEE
14 years 2 days ago
Building the Tree of Life on Terascale Systems
Bayesian phylogenetic inference is an important alternative to maximum likelihood-based phylogenetic method. However, inferring large trees using the Bayesian approach is computat...
Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Bria...
BMCBI
2006
127views more  BMCBI 2006»
13 years 5 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
BIOINFORMATICS
2007
88views more  BIOINFORMATICS 2007»
13 years 5 months ago
Maximum likelihood of phylogenetic networks
Horizontal gene transfer (HGT) is believed to be ubiquitous among bacteria, and plays a major role in their genome diversiļ¬cation as well as their ability to develop resistance t...
Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
BMCBI
2008
86views more  BMCBI 2008»
13 years 5 months ago
Predicting protein linkages in bacteria: Which method is best depends on task
Background: Applications of computational methods for predicting protein functional linkages are increasing. In recent years, several bacteria-specific methods for predicting link...
Anis Karimpour-Fard, Sonia M. Leach, Ryan T. Gill,...