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SODA
2008
ACM
69views Algorithms» more  SODA 2008»
13 years 6 months ago
Trace reconstruction with constant deletion probability and related results
Thomas Holenstein, Michael Mitzenmacher, Rina Pani...
SODA
2004
ACM
111views Algorithms» more  SODA 2004»
13 years 5 months ago
Reconstructing strings from random traces
We are given a collection of m random subsequences (traces) of a string t of length n where each trace is obtained by deleting each bit in the string with probability q. Our goal ...
Tugkan Batu, Sampath Kannan, Sanjeev Khanna, Andre...
RECOMB
2002
Springer
14 years 4 months ago
Deconvolving sequence variation in mixed DNA populations
We present an original approach to identifying sequence variants in a mixed DNA population from sequence trace data. The heart of the method is based on parsimony: given a wildtyp...
Andy Wildenberg, Steven Skiena, Pavel Sumazin
CORR
2010
Springer
94views Education» more  CORR 2010»
13 years 1 months ago
The Stability of Low-Rank Matrix Reconstruction: a Constrained Singular Value View
The stability of low-rank matrix reconstruction is investigated in this paper. The -constrained minimal singular value ( -CMSV) of the measurement operator is shown to determine t...
Gongguo Tang, Arye Nehorai
STOC
2006
ACM
129views Algorithms» more  STOC 2006»
14 years 4 months ago
Optimal phylogenetic reconstruction
One of the major tasks of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on the true evolu...
Constantinos Daskalakis, Elchanan Mossel, Sé...