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ALMOB
2007
155views more  ALMOB 2007»
13 years 5 months ago
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen
BMCBI
2010
198views more  BMCBI 2010»
13 years 5 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
CN
2006
60views more  CN 2006»
13 years 5 months ago
On the efficiency of fluid simulation of networks
Performance evaluation of computer networks through traditional packet-level simulation is becoming increasingly difficult as networks grow in size along different dimensions. Due...
Daniel R. Figueiredo, Benyuan Liu, Yang Guo, James...
JACM
2006
99views more  JACM 2006»
13 years 5 months ago
Finding a maximum likelihood tree is hard
Abstract. Maximum likelihood (ML) is an increasingly popular optimality criterion for selecting evolutionary trees [Felsenstein 1981]. Finding optimal ML trees appears to be a very...
Benny Chor, Tamir Tuller
TIP
2008
108views more  TIP 2008»
13 years 5 months ago
Design of Linear Equalizers Optimized for the Structural Similarity Index
Abstract--We propose an algorithm for designing linear equalizers that maximize the structural similarity (SSIM) index between the reference and restored signals. The SSIM index ha...
Sumohana S. Channappayya, Alan C. Bovik, Constanti...