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BMCBI
2010
153views more  BMCBI 2010»
13 years 5 months ago
MimoSA: a system for minimotif annotation
Background: Minimotifs are short peptide sequences within one protein, which are recognized by other proteins or molecules. While there are now several minimotif databases, they a...
Jay Vyas, Ronald J. Nowling, Thomas Meusburger, Da...
IJCAI
2003
13 years 6 months ago
Employing Trainable String Similarity Metrics for Information Integration
The problem of identifying approximately duplicate objects in databases is an essential step for the information integration process. Most existing approaches have relied on gener...
Mikhail Bilenko, Raymond J. Mooney
BMCBI
2008
130views more  BMCBI 2008»
13 years 5 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
COMAD
2009
13 years 6 months ago
Querying for relations from the semi-structured Web
We present a class of web queries whose result is a multi-column relation instead of a collection of unstructured documents as in standard web search. The user specifies the query...
Sunita Sarawagi
BMCBI
2008
101views more  BMCBI 2008»
13 years 5 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...