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» Trimming of mammalian transcriptional networks using network...
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BMCBI
2010
100views more  BMCBI 2010»
13 years 4 months ago
Trimming of mammalian transcriptional networks using network component analysis
Background: Network Component Analysis (NCA) has been used to deduce the activities of transcription factors (TFs) from gene expression data and the TF-gene binding relationship. ...
Linh M. Tran, Daniel R. Hyduke, James C. Liao
BMCBI
2010
133views more  BMCBI 2010»
13 years 4 months ago
New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data
Background: Identifying candidate genes in genetic networks is important for understanding regulation and biological function. Large gene expression datasets contain relevant info...
Anup Parikh, Eryong Huang, Christopher Dinh, Blaz ...
BMCBI
2008
129views more  BMCBI 2008»
13 years 4 months ago
Motif-directed network component analysis for regulatory network inference
Background: Network Component Analysis (NCA) has shown its effectiveness in discovering regulators and inferring transcription factor activities (TFAs) when both microarray data a...
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Wan...
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ALMOB
2007
111views more  ALMOB 2007»
13 years 4 months ago
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Motivation: Transcriptional regulatory network (TRN) discovery from one method (e.g. microarray analysis, gene ontology, phylogenic similarity) does not seem feasible due to lack ...
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa E...
IPPS
2008
IEEE
13 years 11 months ago
Outlier detection in performance data of parallel applications
— When an adaptive software component is employed to select the best-performing implementation for a communication operation at runtime, the correctness of the decision taken str...
Katharina Benkert, Edgar Gabriel, Michael M. Resch