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» Type Inference in Systems Biology
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BIB
2010
129views more  BIB 2010»
13 years 4 months ago
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
Peter D. Karp, Suzanne M. Paley, Markus Krummenack...
BMCBI
2010
112views more  BMCBI 2010»
13 years 4 months ago
A parameter-adaptive dynamic programming approach for inferring cophylogenies
Background: Coevolutionary systems like hosts and their parasites are commonly used model systems for evolutionary studies. Inferring the coevolutionary history based on given phy...
Daniel Merkle, Martin Middendorf, Nicolas Wieseke
ICFP
2004
ACM
14 years 4 months ago
Types, potency, and idempotency: why nonlinearity and amnesia make a type system work
Useful type inference must be faster than normalization. Otherwise, you could check safety conditions by running the program. We analyze the relationship between bounds on normali...
Harry G. Mairson, Peter Møller Neergaard
POPL
2009
ACM
14 years 5 months ago
Flexible types: robust type inference for first-class polymorphism
We present HML, a type inference system that supports full firstclass polymorphism where few annotations are needed: only function parameters with a polymorphic type need to be an...
Daan Leijen
ICFP
1999
ACM
13 years 9 months ago
Type Inference with Rank 1 Polymorphism for Type-Directed Compilation of ML
This paper defines an extended polymorphic type system for an ML-style programming language, and develops a sound and complete type inference algorithm. Different from the conve...
Atsushi Ohori, Nobuaki Yoshida